PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA001870-PA
Common NameOsI_01449
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 693aa    MW: 73240 Da    PI: 7.4532
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA001870-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.39e-16444490455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  BGIOSGA001870-PA 444 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 490
                       5*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.36E-17437494No hitNo description
SuperFamilySSF474592.09E-20438499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.981440489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-13444490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-20444498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17446495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MEGGDERQRW RFNQTRVQSP LGSTSLHRLS LEVAMWAPKV VHCRCLTSHT HARLPRKSDG  60
NDFAELLWEN GQAVVHGRKK HPQPAFPPFG FFGGTGGGGG SSSSRAQERQ PGGIDAFAKV  120
GGGFGALGMA PAVHDFASGF GATTQDNGDD DTVPWIHYPI IDDEDAAAPA ALAAADYGSD  180
FFSELQAAAA AAAAAAPPTD LASLPASNHN GATNNRNAPV ATTTTREPSK ESHGGLSVPT  240
TRAEPQPQPQ LAAAKLPRSS GSGGGEGVMN FSLFSRPAVL ARATLESAQR TQGTDNKASN  300
VTASNRVEST VVQTASGPRS APAFADQRAA AWPPQPKEMP FASTAAAPMA PAVNLHHEMD  360
RDRAGRTMRV HKTEARKAPE ATVATSSVCS GNGAGSDELW RQQKRKCQAQ AECSASQDDD  420
LDDEPGVLRK SGTRSTKRSR TAEVHNLSER RRRDRINEKM RALQELIPNC NKIDKASMLD  480
EAIEYLKTLQ LQVQMMSMGT GLCIPPMLLP TAMQHLQIPP MAHFPHLGMG LGYGMGVFDM  540
SNTGALQMPP MPGAHFPCPM IPGASPQGLG IPGTSTMPMF GVPGQTIPSS ASSVPPFASL  600
AGLPVRPSGV PQVSGAMANM VQDQQQGIAN QQQQCLNKEA IQGANPGDSQ MQIIMQGDNE  660
NFRIPSSAQT KSSQFSDGTG KGTNARERDG AET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1448453ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.277050.0callus| flower| leaf| panicle| root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329874610.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1022520.0AK102252.1 Oryza sativa Japonica Group cDNA clone:J033088H11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619034.10.0PREDICTED: transcription factor APG-like isoform X2
TrEMBLB8ACM60.0B8ACM6_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA001870-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-34phytochrome interacting factor 3